IL_6ZME_236
3D structure
- PDB id
- 6ZME (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZME_236 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.092
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6ZME|1|S2|C|1047
6ZME|1|S2|G|1048
6ZME|1|S2|A|1049
6ZME|1|S2|A|1050
6ZME|1|S2|G|1051
*
6ZME|1|S2|C|1067
6ZME|1|S2|G|1068
6ZME|1|S2|U|1069
6ZME|1|S2|A|1070
6ZME|1|S2|G|1071
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain SO
- 40S ribosomal protein S14
- Chain Sa
- 40S ribosomal protein S26
Coloring options: