IL_6ZMI_058
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6ZMI|1|L5|A|1650, 6ZMI|1|L5|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_058 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.072
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZMI|1|L5|G|1522
6ZMI|1|L5|A|1523
6ZMI|1|L5|A|1524
6ZMI|1|L5|A|1525
6ZMI|1|L5|G|1526
*
6ZMI|1|L5|C|1648
6ZMI|1|L5|U|1649
6ZMI|1|L5|A|1650
6ZMI|1|L5|G|1651
6ZMI|1|L5|U|1652
6ZMI|1|L5|A|1653
6ZMI|1|L5|G|1654
6ZMI|1|L5|C|1655
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Lj
- 60S ribosomal protein L37
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