3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UAUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
6ZMI|1|L5|A|1960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_086 not in the Motif Atlas
Homologous match to IL_8C3A_057
Geometric discrepancy: 0.3131
The information below is about IL_8C3A_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6ZMI|1|L5|U|1957
6ZMI|1|L5|A|1958
6ZMI|1|L5|U|1959
6ZMI|1|L5|A|1960
6ZMI|1|L5|G|1961
6ZMI|1|L5|A|1962
6ZMI|1|L5|C|1963
6ZMI|1|L5|A|1964
6ZMI|1|L5|G|1965
*
6ZMI|1|L5|C|2022
6ZMI|1|L5|C|2023
6ZMI|1|L5|G|2024
6ZMI|1|L5|A|2025
6ZMI|1|L5|A|2026

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LS
60S ribosomal protein L18a
Chain Lm
Ubiquitin-60S ribosomal protein L40
Chain Ls
60S acidic ribosomal protein P0

Coloring options:


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