IL_6ZMI_095
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_095 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.0689
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6ZMI|1|L5|G|2358
6ZMI|1|L5|U|2359
6ZMI|1|L5|A|2360
6ZMI|1|L5|G|2361
6ZMI|1|L5|U|2362
6ZMI|1|L5|A|2363
6ZMI|1|L5|G|2364
*
6ZMI|1|L5|C|3858
6ZMI|1|L5|G|3859
6ZMI|1|L5|A|3860
6ZMI|1|L5|A|3861
6ZMI|1|L5|A|3862
6ZMI|1|L5|C|3863
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
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