IL_6ZMI_099
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUGG*CGUU
- Length
- 9 nucleotides
- Bulged bases
- 6ZMI|1|L5|U|2485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_099 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3578
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZMI|1|L5|G|2483
6ZMI|1|L5|A|2484
6ZMI|1|L5|U|2485
6ZMI|1|L5|G|2486
6ZMI|1|L5|G|2487
*
6ZMI|1|L5|C|2492
6ZMI|1|L5|G|2493
6ZMI|1|L5|U|2494
6ZMI|1|L5|U|2495
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- 60S ribosomal protein L23a
Coloring options: