IL_6ZMI_100

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6ZMI|1|L5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_100 not in the Motif Atlas

Geometric match to IL_5J7L_282

Geometric discrepancy: 0.2109

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZMI|1|L5|G|2542
6ZMI|1|L5|A|2543
6ZMI|1|L5|G|2544
6ZMI|1|L5|U|2545
6ZMI|1|L5|G|2546
6ZMI|1|L5|G|2547
*
6ZMI|1|L5|C|2772
6ZMI|1|L5|G|2773
6ZMI|1|L5|C|2774

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38