IL_6ZMI_120

3D structure

PDB id

6ZMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6ZMI|1|L5|A|3746, 6ZMI|1|L5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMI_120 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0845

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZMI|1|L5|U|3704
6ZMI|1|L5|G|3705
*
6ZMI|1|L5|U|3745
6ZMI|1|L5|A|3746
6ZMI|1|L5|A|3747
6ZMI|1|L5|A|3748

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8