3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UGGU*AA
Length
6 nucleotides
Bulged bases
6ZMI|1|S2|G|113, 6ZMI|1|S2|G|114
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_192 not in the Motif Atlas
Homologous match to IL_4V88_392
Geometric discrepancy: 0.1214
The information below is about IL_4V88_392
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

6ZMI|1|S2|U|112
6ZMI|1|S2|G|113
6ZMI|1|S2|G|114
6ZMI|1|S2|U|115
*
6ZMI|1|S2|A|348
6ZMI|1|S2|A|349

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SI
40S ribosomal protein S8
Chain SL
40S ribosomal protein S11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3731 s