IL_6ZMI_199
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUU*ACCUCGGG
- Length
- 12 nucleotides
- Bulged bases
- 6ZMI|1|S2|U|305, 6ZMI|1|S2|G|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_199 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.3734
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
6ZMI|1|S2|C|216
6ZMI|1|S2|A|217
6ZMI|1|S2|U|218
6ZMI|1|S2|U|219
*
6ZMI|1|S2|A|302
6ZMI|1|S2|C|303
6ZMI|1|S2|C|304
6ZMI|1|S2|U|305
6ZMI|1|S2|C|306
6ZMI|1|S2|G|307
6ZMI|1|S2|G|308
6ZMI|1|S2|G|309
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SI
- 40S ribosomal protein S8
Coloring options: