3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UAUCAA*UGACCACG
Length
14 nucleotides
Bulged bases
6ZMI|1|S2|U|361, 6ZMI|1|S2|C|399
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_204 not in the Motif Atlas
Homologous match to IL_4V88_402
Geometric discrepancy: 0.0763
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

6ZMI|1|S2|U|359
6ZMI|1|S2|A|360
6ZMI|1|S2|U|361
6ZMI|1|S2|C|362
6ZMI|1|S2|A|363
6ZMI|1|S2|A|364
*
6ZMI|1|S2|U|396
6ZMI|1|S2|G|397
6ZMI|1|S2|A|398
6ZMI|1|S2|C|399
6ZMI|1|S2|C|400
6ZMI|1|S2|A|401
6ZMI|1|S2|C|402
6ZMI|1|S2|G|403

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain SI
40S ribosomal protein S8
Chain SL
40S ribosomal protein S11
Chain SX
40S ribosomal protein S23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3463 s