IL_6ZMI_233
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 6ZMI|1|S2|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_233 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.0754
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6ZMI|1|S2|C|931
6ZMI|1|S2|G|932
6ZMI|1|S2|G|933
6ZMI|1|S2|G|934
6ZMI|1|S2|G|935
*
6ZMI|1|S2|C|1007
6ZMI|1|S2|A|1008
6ZMI|1|S2|A|1009
6ZMI|1|S2|G|1010
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain Lc
- 60S ribosomal protein L30
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain Sa
- 40S ribosomal protein S26
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