3D structure

PDB id
6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GUGCCUACC*GUAACC
Length
15 nucleotides
Bulged bases
6ZMI|1|S2|A|1580
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZMI_263 not in the Motif Atlas
Geometric match to IL_5J7L_055
Geometric discrepancy: 0.2094
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

6ZMI|1|S2|G|1550
6ZMI|1|S2|U|1551
6ZMI|1|S2|G|1552
6ZMI|1|S2|C|1553
6ZMI|1|S2|C|1554
6ZMI|1|S2|U|1555
6ZMI|1|S2|A|1556
6ZMI|1|S2|C|1557
6ZMI|1|S2|C|1558
*
6ZMI|1|S2|G|1577
6ZMI|1|S2|U|1578
6ZMI|1|S2|A|1579
6ZMI|1|S2|A|1580
6ZMI|1|S2|C|1581
6ZMI|1|S2|C|1582

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
40S ribosomal protein S3
Chain SK
40S ribosomal protein S10
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

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