IL_6ZMI_288
3D structure
- PDB id
- 6ZMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6ZMI|1|S2|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMI_288 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2829
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZMI|1|S2|G|1281
6ZMI|1|S2|A|1282
6ZMI|1|S2|C|1283
6ZMI|1|S2|A|1284
6ZMI|1|S2|G|1285
6ZMI|1|S2|G|1286
6ZMI|1|S2|A|1287
6ZMI|1|S2|U|1288
6ZMI|1|S2|U|1289
6ZMI|1|S2|G|1290
*
6ZMI|1|S2|C|1309
6ZMI|1|S2|U|1310
6ZMI|1|S2|C|1311
6ZMI|1|S2|G|1312
6ZMI|1|S2|A|1313
6ZMI|1|S2|U|1314
6ZMI|1|S2|U|1315
6ZMI|1|S2|C|1316
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SM
- 40S ribosomal protein S12
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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