IL_6ZMO_037

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6ZMO|1|L5|G|748, 6ZMO|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_037 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1745

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZMO|1|L5|G|745
6ZMO|1|L5|A|746
6ZMO|1|L5|A|747
6ZMO|1|L5|G|748
6ZMO|1|L5|G|749
6ZMO|1|L5|U|750
6ZMO|1|L5|G|751
6ZMO|1|L5|G|752
*
6ZMO|1|L5|U|911
6ZMO|1|L5|G|912
6ZMO|1|L5|U|913
6ZMO|1|L5|U|914
6ZMO|1|L5|A|915
6ZMO|1|L5|C|916
6ZMO|1|L5|A|917
6ZMO|1|L5|G|918
6ZMO|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a