IL_6ZMO_086

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6ZMO|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_086 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.2077

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6ZMO|1|L5|U|1957
6ZMO|1|L5|A|1958
6ZMO|1|L5|U|1959
6ZMO|1|L5|A|1960
6ZMO|1|L5|G|1961
6ZMO|1|L5|A|1962
6ZMO|1|L5|C|1963
6ZMO|1|L5|A|1964
6ZMO|1|L5|G|1965
*
6ZMO|1|L5|C|2022
6ZMO|1|L5|C|2023
6ZMO|1|L5|G|2024
6ZMO|1|L5|A|2025
6ZMO|1|L5|A|2026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

60S acidic ribosomal protein P0