IL_6ZMO_095

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_095 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0741

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZMO|1|L5|G|2358
6ZMO|1|L5|U|2359
6ZMO|1|L5|A|2360
6ZMO|1|L5|G|2361
6ZMO|1|L5|U|2362
6ZMO|1|L5|A|2363
6ZMO|1|L5|G|2364
*
6ZMO|1|L5|C|3858
6ZMO|1|L5|G|3859
6ZMO|1|L5|A|3860
6ZMO|1|L5|A|3861
6ZMO|1|L5|A|3862
6ZMO|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17