IL_6ZMO_108

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_108 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0917

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6ZMO|1|L5|A|2832
6ZMO|1|L5|A|2833
6ZMO|1|L5|C|2834
6ZMO|1|L5|A|2835
6ZMO|1|L5|A|2836
6ZMO|1|L5|U|2837
6ZMO|1|L5|G|2838
*
6ZMO|1|L5|C|3850
6ZMO|1|L5|U|3851
6ZMO|1|L5|A|3852
6ZMO|1|L5|U|3853

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31