IL_6ZMO_164

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_164 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3759

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6ZMO|1|L5|U|4885
6ZMO|1|L5|C|4886
6ZMO|1|L5|C|4887
6ZMO|1|L5|U|4888
6ZMO|1|L5|G|4889
*
6ZMO|1|L5|C|4930
6ZMO|1|L5|G|4931
6ZMO|1|L5|U|4932
6ZMO|1|L5|C|4933
6ZMO|1|L5|A|4934

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a