IL_6ZMO_172

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6ZMO|1|L5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_172 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1758

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZMO|1|L5|G|5000
6ZMO|1|L5|U|5001
6ZMO|1|L5|U|5002
*
6ZMO|1|L5|G|5045
6ZMO|1|L5|U|5046
6ZMO|1|L5|C|5047
6ZMO|1|L5|A|5048
6ZMO|1|L5|G|5049
6ZMO|1|L5|C|5050

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Ld

60S ribosomal protein L31