IL_6ZMO_221
3D structure
- PDB id
- 6ZMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 6ZMO|1|S2|A|668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZMO_221 not in the Motif Atlas
- Homologous match to IL_4V88_416
- Geometric discrepancy: 0.1328
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
6ZMO|1|S2|G|665
6ZMO|1|S2|U|666
6ZMO|1|S2|U|667
6ZMO|1|S2|A|668
6ZMO|1|S2|A|669
6ZMO|1|S2|A|670
6ZMO|1|S2|A|671
*
6ZMO|1|S2|U|1161
6ZMO|1|S2|C|1162
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
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