IL_6ZMO_232

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6ZMO|1|S2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_232 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.0939

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZMO|1|S2|C|931
6ZMO|1|S2|G|932
6ZMO|1|S2|G|933
6ZMO|1|S2|G|934
6ZMO|1|S2|G|935
*
6ZMO|1|S2|C|1007
6ZMO|1|S2|A|1008
6ZMO|1|S2|A|1009
6ZMO|1|S2|G|1010

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26