IL_6ZMO_259

3D structure

PDB id

6ZMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

6ZMO|1|S2|C|1433, 6ZMO|1|S2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMO_259 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2355

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZMO|1|S2|U|1408
6ZMO|1|S2|A|1409
*
6ZMO|1|S2|U|1432
6ZMO|1|S2|C|1433
6ZMO|1|S2|C|1434
6ZMO|1|S2|C|1435
6ZMO|1|S2|C|1436
6ZMO|1|S2|C|1437
6ZMO|1|S2|A|1438

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20