IL_6ZMT_017

3D structure

PDB id

6ZMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6ZMT|1|2|U|305, 6ZMT|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMT_017 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3839

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ZMT|1|2|C|216
6ZMT|1|2|A|217
6ZMT|1|2|U|218
6ZMT|1|2|U|219
*
6ZMT|1|2|A|302
6ZMT|1|2|C|303
6ZMT|1|2|C|304
6ZMT|1|2|U|305
6ZMT|1|2|C|306
6ZMT|1|2|G|307
6ZMT|1|2|G|308
6ZMT|1|2|G|309

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8