IL_6ZMW_037

3D structure

PDB id

6ZMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZMW_037 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1332

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6ZMW|1|A|G|665
6ZMW|1|A|U|666
6ZMW|1|A|U|667
6ZMW|1|A|A2M|668
6ZMW|1|A|A|669
6ZMW|1|A|A|670
6ZMW|1|A|A|671
*
6ZMW|1|A|U|1161
6ZMW|1|A|C|1162

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S23

Chain Q

40S ribosomal protein S26