IL_6ZN5_014

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZN5|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1249

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZN5|1|2|G|145
6ZN5|1|2|G|146
6ZN5|1|2|A|147
6ZN5|1|2|U|148
6ZN5|1|2|A|149
6ZN5|1|2|A|150
6ZN5|1|2|C|151
*
6ZN5|1|2|G|167
6ZN5|1|2|C|168
6ZN5|1|2|U|169
6ZN5|1|2|A|170
6ZN5|1|2|A|171
6ZN5|1|2|U|172
6ZN5|1|2|A|173
6ZN5|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24