IL_6ZN5_030

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

6ZN5|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_030 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2598

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6ZN5|1|2|G|535
6ZN5|1|2|A|536
6ZN5|1|2|C|537
*
6ZN5|1|2|G|546
6ZN5|1|2|G|547
6ZN5|1|2|C|548
6ZN5|1|2|C|549

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S30