IL_6ZN5_082

3D structure

PDB id

6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZN5_082 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1623

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZN5|1|2|G|1702
6ZN5|1|2|C|1703
6ZN5|1|2|C|1704
6ZN5|1|2|C|1705
*
6ZN5|1|2|G|1829
6ZN5|1|2|U|1830
6ZN5|1|2|A|1831
6ZN5|1|2|A|1832
6ZN5|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains