IL_6ZOJ_021

3D structure

PDB id

6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6ZOJ|1|2|U|361, 6ZOJ|1|2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOJ_021 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1008

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZOJ|1|2|U|359
6ZOJ|1|2|A|360
6ZOJ|1|2|U|361
6ZOJ|1|2|C|362
6ZOJ|1|2|A|363
6ZOJ|1|2|A|364
*
6ZOJ|1|2|U|396
6ZOJ|1|2|G|397
6ZOJ|1|2|A|398
6ZOJ|1|2|C|399
6ZOJ|1|2|C|400
6ZOJ|1|2|A|401
6ZOJ|1|2|C|402
6ZOJ|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11

Chain X

40S ribosomal protein S23