IL_6ZOJ_069
3D structure
- PDB id
- 6ZOJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2-Nsp1-40S complex, composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6ZOJ|1|2|U|1494, 6ZOJ|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZOJ_069 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1319
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6ZOJ|1|2|U|1333
6ZOJ|1|2|G|1334
6ZOJ|1|2|G|1335
*
6ZOJ|1|2|U|1492
6ZOJ|1|2|C|1493
6ZOJ|1|2|U|1494
6ZOJ|1|2|G|1495
6ZOJ|1|2|U|1496
6ZOJ|1|2|G|1497
6ZOJ|1|2|A|1498
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ribosomal protein S27a
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