IL_6ZOK_021

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6ZOK|1|2|U|361, 6ZOK|1|2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_021 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1008

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZOK|1|2|U|359
6ZOK|1|2|A|360
6ZOK|1|2|U|361
6ZOK|1|2|C|362
6ZOK|1|2|A|363
6ZOK|1|2|A|364
*
6ZOK|1|2|U|396
6ZOK|1|2|G|397
6ZOK|1|2|A|398
6ZOK|1|2|C|399
6ZOK|1|2|C|400
6ZOK|1|2|A|401
6ZOK|1|2|C|402
6ZOK|1|2|G|403

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11

Chain X

40S ribosomal protein S23