IL_6ZOK_034

3D structure

PDB id

6ZOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2-Nsp1-40S complex, focused on body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6ZOK|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZOK_034 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1488

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZOK|1|2|G|611
6ZOK|1|2|U|612
6ZOK|1|2|G|613
6ZOK|1|2|C|614
6ZOK|1|2|C|615
6ZOK|1|2|A|616
6ZOK|1|2|G|617
*
6ZOK|1|2|C|624
6ZOK|1|2|G|625
6ZOK|1|2|G|626
6ZOK|1|2|U|627
6ZOK|1|2|A|628
6ZOK|1|2|A|629
6ZOK|1|2|U|630
6ZOK|1|2|U|631
6ZOK|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain j

Non-structural protein 1