IL_6ZON_014

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZON|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZON_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1063

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZON|1|2|G|145
6ZON|1|2|G|146
6ZON|1|2|A|147
6ZON|1|2|U|148
6ZON|1|2|A|149
6ZON|1|2|A|150
6ZON|1|2|C|151
*
6ZON|1|2|G|167
6ZON|1|2|C|168
6ZON|1|2|U|169
6ZON|1|2|A|170
6ZON|1|2|A|171
6ZON|1|2|U|172
6ZON|1|2|A|173
6ZON|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S6

Chain z

40S ribosomal protein S24