IL_6ZON_033
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZON_033 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.0858
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
6ZON|1|2|A|599
6ZON|1|2|G|600
6ZON|1|2|G|601
6ZON|1|2|G|602
6ZON|1|2|C|603
6ZON|1|2|A|604
6ZON|1|2|A|605
6ZON|1|2|G|606
*
6ZON|1|2|C|636
6ZON|1|2|U|637
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- Host translation inhibitor Nsp1
- Chain T
- 40S ribosomal protein S30
- Chain c
- 40S ribosomal protein S9
- Chain d
- 40S ribosomal protein S2
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