IL_6ZON_040

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZON_040 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3177

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6ZON|1|2|G|692
6ZON|1|2|A|693
6ZON|1|2|G|694
*
6ZON|1|2|C|736
6ZON|1|2|G|737
6ZON|1|2|C|738

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain s

40S ribosomal protein S7