IL_6ZON_053

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCUAG*CUUGGACCG

Length

15 nucleotides

Bulged bases

6ZON|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZON_053 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3791

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6ZON|1|2|C|951
6ZON|1|2|G|952
6ZON|1|2|C|953
6ZON|1|2|U|954
6ZON|1|2|A|955
6ZON|1|2|G|956
*
6ZON|1|2|C|967
6ZON|1|2|U|968
6ZON|1|2|U|969
6ZON|1|2|G|970
6ZON|1|2|G|971
6ZON|1|2|A|972
6ZON|1|2|C|973
6ZON|1|2|C|974
6ZON|1|2|G|975

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S14

Chain p

40S ribosomal protein S3a