IL_6ZON_056
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6ZON|1|2|C|1153, 6ZON|1|2|U|1155, 6ZON|1|2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZON_056 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1138
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZON|1|2|C|1091
6ZON|1|2|G|1092
6ZON|1|2|A|1093
*
6ZON|1|2|U|1152
6ZON|1|2|C|1153
6ZON|1|2|U|1154
6ZON|1|2|U|1155
6ZON|1|2|U|1156
6ZON|1|2|G|1157
6ZON|1|2|G|1158
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S27
- Chain d
- 40S ribosomal protein S2
- Chain f
- 40S ribosomal protein S15a
- Chain j
- 40S ribosomal protein S23
- Chain m
- 40S ribosomal protein S13
- Chain n
- 40S ribosomal protein S11
Coloring options: