IL_6ZON_079

3D structure

PDB id

6ZON (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZON_079 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.208

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6ZON|1|2|C|1559
6ZON|1|2|U|1560
6ZON|1|2|A|1561
6ZON|1|2|C|1562
*
6ZON|1|2|G|1573
6ZON|1|2|C|1574
6ZON|1|2|G|1575
6ZON|1|2|G|1576

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S29

Chain x

40S ribosomal protein S19