IL_6ZON_095
3D structure
- PDB id
- 6ZON (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZON_095 not in the Motif Atlas
- Homologous match to IL_8P9A_419
- Geometric discrepancy: 0.0624
- The information below is about IL_8P9A_419
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6ZON|1|2|G|928
6ZON|1|2|G|929
6ZON|1|2|C|930
6ZON|1|2|C|931
*
6ZON|1|2|G|1010
6ZON|1|2|A|1011
6ZON|1|2|A|1012
6ZON|1|2|U|1013
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Eukaryotic translation initiation factor 3 subunit C
- Chain R
- 40S ribosomal protein S27
- Chain m
- 40S ribosomal protein S13
- Chain p
- 40S ribosomal protein S3a
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