IL_6ZP4_070

3D structure

PDB id

6ZP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

6ZP4|1|2|U|1494, 6ZP4|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZP4_070 not in the Motif Atlas

Homologous match to IL_4V88_451

Geometric discrepancy: 0.0916

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZP4|1|2|U|1333
6ZP4|1|2|G|1334
6ZP4|1|2|G|1335
*
6ZP4|1|2|U|1492
6ZP4|1|2|C|1493
6ZP4|1|2|U|1494
6ZP4|1|2|G|1495
6ZP4|1|2|U|1496
6ZP4|1|2|G|1497
6ZP4|1|2|A|1498

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain b

40S ribosomal protein S3

Chain h

40S ribosomal protein S20

Chain l

40S ribosomal protein S29

Chain u

40S ribosomal protein S10