IL_6ZQB_021
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAC*GUAUC
- Length
- 9 nucleotides
- Bulged bases
- 6ZQB|1|D2|U|440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_021 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.2206
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZQB|1|D2|G|414
6ZQB|1|D2|U|415
6ZQB|1|D2|A|416
6ZQB|1|D2|C|417
*
6ZQB|1|D2|G|437
6ZQB|1|D2|U|438
6ZQB|1|D2|A|439
6ZQB|1|D2|U|440
6ZQB|1|D2|C|441
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain JM
- rRNA-processing protein FCF2
- Chain JQ
- Regulator of rDNA transcription protein 14
- Chain UZ
- Ribosome biogenesis protein UTP30
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