3D structure

PDB id
6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAUG*UGG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZQB_040 not in the Motif Atlas
Homologous match to IL_4V88_400
Geometric discrepancy: 0.5834
The information below is about IL_4V88_400
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47298.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

6ZQB|1|D3|C|270
6ZQB|1|D3|A|271
6ZQB|1|D3|U|272
6ZQB|1|D3|G|273
*
6ZQB|1|D3|U|283
6ZQB|1|D3|G|284
6ZQB|1|D3|G|285

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DG
40S ribosomal protein S6-A
Chain UT
U3 small nucleolar RNA-associated protein 20

Coloring options:


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