IL_6ZQB_044
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAU*GAUU
- Length
- 9 nucleotides
- Bulged bases
- 6ZQB|1|D3|G|365
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_044 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.2191
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZQB|1|D3|G|364
6ZQB|1|D3|G|365
6ZQB|1|D3|A|366
6ZQB|1|D3|A|367
6ZQB|1|D3|U|368
*
6ZQB|1|D3|G|377
6ZQB|1|D3|A|378
6ZQB|1|D3|U|379
6ZQB|1|D3|U|380
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain JE
- U3 small nucleolar ribonucleoprotein protein LCP5
Coloring options: