IL_6ZQB_046

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_046 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.3234

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_64928.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

263

Unit IDs

6ZQB|1|D3|C|411
6ZQB|1|D3|A|412
6ZQB|1|D3|U|413
*
6ZQB|1|D3|A|420
6ZQB|1|D3|A|421
6ZQB|1|D3|G|422

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain JA

RNA cytidine acetyltransferase