IL_6ZQB_052

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CAGC

Length

6 nucleotides

Bulged bases

6ZQB|1|D3|A|585, 6ZQB|1|D3|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_052 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.239

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6ZQB|1|D3|G|551
6ZQB|1|D3|G|552
*
6ZQB|1|D3|C|584
6ZQB|1|D3|A|585
6ZQB|1|D3|G|586
6ZQB|1|D3|C|587

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain UC

Something about silencing protein 10

Chain UK

U3 small nucleolar RNA-associated protein 11