IL_6ZQB_069
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUGCG*CGCGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_069 not in the Motif Atlas
- Geometric match to IL_1L9A_008
- Geometric discrepancy: 0.3655
- The information below is about IL_1L9A_008
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZQB|1|D3|C|1173
6ZQB|1|D3|C|1174
6ZQB|1|D3|U|1175
6ZQB|1|D3|G|1176
6ZQB|1|D3|C|1177
6ZQB|1|D3|G|1178
*
6ZQB|1|D3|C|1461
6ZQB|1|D3|G|1462
6ZQB|1|D3|C|1463
6ZQB|1|D3|G|1464
6ZQB|1|D3|C|1465
6ZQB|1|D3|G|1466
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CJ
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain CK
- U3 small nucleolar RNA-associated protein MPP10
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain UB
- Nucleolar complex protein 14
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