IL_6ZQB_089
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUGG*CCAUUG
- Length
- 11 nucleotides
- Bulged bases
- 6ZQB|1|D2|U|267
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_089 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3415
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6ZQB|1|D2|C|245
6ZQB|1|D2|G|246
6ZQB|1|D2|U|247
6ZQB|1|D2|G|248
6ZQB|1|D2|G|249
*
6ZQB|1|D2|C|263
6ZQB|1|D2|C|264
6ZQB|1|D2|A|265
6ZQB|1|D2|U|266
6ZQB|1|D2|U|267
6ZQB|1|D2|G|268
Current chains
- Chain D2
- 5ETS RNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DQ
- 40S ribosomal protein S16-A
- Chain UK
- U3 small nucleolar RNA-associated protein 11
Coloring options: