IL_6ZQB_099
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCGUU*AAAU
- Length
- 10 nucleotides
- Bulged bases
- 6ZQB|1|D3|C|114, 6ZQB|1|D3|G|115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_099 not in the Motif Atlas
- Homologous match to IL_8P9A_380
- Geometric discrepancy: 0.4278
- The information below is about IL_8P9A_380
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
6ZQB|1|D3|A|112
6ZQB|1|D3|U|113
6ZQB|1|D3|C|114
6ZQB|1|D3|G|115
6ZQB|1|D3|U|116
6ZQB|1|D3|U|117
*
6ZQB|1|D3|A|299
6ZQB|1|D3|A|300
6ZQB|1|D3|A|301
6ZQB|1|D3|U|302
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
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