IL_6ZQB_100
3D structure
- PDB id
- 6ZQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUC*GAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQB_100 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.2138
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6ZQB|1|D3|G|624
6ZQB|1|D3|C|625
6ZQB|1|D3|U|626
6ZQB|1|D3|C|627
*
6ZQB|1|D3|G|972
6ZQB|1|D3|A|973
6ZQB|1|D3|A|974
6ZQB|1|D3|C|975
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DN
- 40S ribosomal protein S13
- Chain JO
- KRR1 small subunit processome component
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