IL_6ZQB_108

3D structure

PDB id

6ZQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQB_108 not in the Motif Atlas

Homologous match to IL_8P9A_464

Geometric discrepancy: 0.533

The information below is about IL_8P9A_464

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6ZQB|1|D3|U|1688
6ZQB|1|D3|A|1689
6ZQB|1|D3|G|1690
*
6ZQB|1|D3|C|1711
6ZQB|1|D3|A|1712
6ZQB|1|D3|G|1713

Current chains

Chain D3

18S rRNA

Nearby chains