IL_6ZQC_109

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQC_109 not in the Motif Atlas

Homologous match to IL_8P9A_407

Geometric discrepancy: 0.1969

The information below is about IL_8P9A_407

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6ZQC|1|D3|C|627
6ZQC|1|D3|G|628
6ZQC|1|D3|U|629
6ZQC|1|D3|A|630
6ZQC|1|D3|G|631
*
6ZQC|1|D3|U|968
6ZQC|1|D3|C|969
6ZQC|1|D3|A|970
6ZQC|1|D3|A|971
6ZQC|1|D3|G|972

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DN

40S ribosomal protein S13

Chain DW

40S ribosomal protein S22-A

Chain JO

KRR1 small subunit processome component